Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs6090880 chr20:47222899 C/G 0 501 31.5 32.1 6.78 KM Plot
THCA rs6090881 chr20:47224849 A/G 0 502 31.6 32.07 6.78 KM Plot
THCA rs6090882 chr20:47232222 G/A 0 502 31.6 32.07 6.78 KM Plot
THCA rs6090884 chr20:47246728 A/C 0 501 31.47 32.93 7.77 KM Plot
THCA rs60943454 chr15:72029632 G/T 4.19E-10 499 31.47 34 20 KM Plot
THCA rs6095201 chr20:47215310 A/G 3.81E-9 494 31.53 32.52 7.77 KM Plot
THCA rs6095204 chr20:47218150 T/C 0 495 31.53 32.93 7.77 KM Plot
THCA rs6095206 chr20:47224996 G/A 0 500 31.68 32.07 6.78 KM Plot
THCA rs6095210 chr20:47232579 C/T 0 502 31.6 32.07 6.78 KM Plot
THCA rs6095211 chr20:47232691 G/C 0 501 31.67 32.07 6.78 KM Plot
THCA rs6095213 chr20:47236830 G/A 0 502 31.6 32.07 6.78 KM Plot
THCA rs6095215 chr20:47242644 A/C 0 503 31.47 33.1 6.78 KM Plot
THCA rs6095228 chr20:47279876 A/G 2.0E-15 503 5.8 32.5 31.5 KM Plot
THCA rs6095229 chr20:47283774 C/T 1.33E-15 500 31.7 31.28 5.8 KM Plot
THCA rs6095244 chr20:47318774 T/C 4.02E-9 501 31.53 32.07 18.22 KM Plot